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Conference Papers Year : 2022

Automatic Semi-quantitative Histological Assessment of Tissue Traits Using a Smart Web Application

Abstract

A smart web application suitable for classifying goblet cell hyperplasia and level of mucus production in stained lung tissues from mice with experimentally induced allergic asthma. Multiple trainer-model approaches are investigated and proposed in this manuscript, based on machine learning techniques, which provide a technological evolution in the analysis of traits of biomedical imaging. Several schemes, which consist of pre-trained image classifiers on ImageNet, are analyzed and compared each other. Lung tissue images of mice with allergic asthma, depicting mucus-containing periodic acid-Schiff (PAS) positive bronchial cells, are fed as input datasets. The performance of each model is evaluated, based on a variety of metrics: accuracy, recall, precision, cross entropy, f1-score, confusion matrix. Such a web tool could contribute to biomedical research by providing an automated standardized way to determine phenotypic severity of histological traits based on a semi-quantitative scoring scale.
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hal-04317177 , version 1 (01-12-2023)

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Olympia Giannou, Dimitra E. Zazara, Anastasios D. Giannou, Petra Clara Arck, Georgios Pavlidis. Automatic Semi-quantitative Histological Assessment of Tissue Traits Using a Smart Web Application. 18th IFIP International Conference on Artificial Intelligence Applications and Innovations (AIAI), Jun 2022, Hersonissos, Greece. pp.180-191, ⟨10.1007/978-3-031-08333-4_15⟩. ⟨hal-04317177⟩
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